Peer-reviewed Publications
*co-first authors
19. Brownstein, C. D.*, MacGuigan, D. J.*, Kim, D., Orr, O., Yang, L., David, S. R., Kreiser, B., and T. J. Near. (2024). The genomic signatures of evolutionary stasis, Evolution. DOI: 10.1093/evolut/qpae028
18. MacGuigan, D. J., Krabbenhoft, T. J., Harrington, R. C., Wainwright, D. K., Backenstose, N. J. C., and T. J. Near. (2023). Lacustrine speciation associated with chromosomal inversion in a lineage of riverine fishes. Evolution. DOI: 10.1093/evolut/qpad067
17. MacGuigan, D. J., Porto-Hannes, I., Foote, B., Backenstose, N. J. C., Osborne, C., Louisor, K., Waterman, H., Chang, S. L., Cochran, J. L., and T. J. Krabbenhoft. (2023). Spotty distributions: Spotted Gar (Lepisosteus oculatus) and Spotted Sucker (Minytrema melanops) range expansion in eastern Lake Erie. Journal of Great Lakes Research. DOI: 10.1016/j.jglr.2023.05.009
16. Near, T. J., Simmons, J. W., Strange, R. M., Brandt, S. L. Thomas, M. R., Harrington, R. C., and D. J. MacGuigan. (2023). Systematics of the Stripetail Darter, Etheostoma kennicotti (Putman), and the Distinctiveness of the Upper Cumberland Endemic Etheostoma cumberlandicum Jordan and Swain. Ichthyology & Herpetology. DOI: 10.1643/i2021053
15. MacGuigan, D. J.*, Mount, G. G.*, Watkins-Colwell, G. J., Near, T. J., and M. R. Lambert. (2022). Genomic Data Clarify Aquarana Systematics and Reveal Isolation-by-Distance Dominates Phylogeography of the Wide-Ranging Frog Rana clamitans. Ichthyology & Herpetology. DOI: 10.1643/h2021129
14. MacGuigan, D. J., Orr, O., and T. J. Near. (2022). Phylogeography, population structure, hybridization, and species discovery in the Etheostoma nigrum species complex. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2022.107645
13. Krabbenhoft, T. J., MacGuigan, D. J., Backenstose, N. J. C., Waterman, H., Lan, T., Pelosi, J. A., Tan, M., and S. R. Sandve. (2021). Chromosome-Level Genome Assembly of the Chinese Sucker (Myxocyrpinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication. Genome Biology & Evolution. DOI: 10.1093/gbe/evab190
12. Melo, B. F., Sidlauskas, B., Near, T. J., Roxo, F. F., Ghezelayagh, A., Ochoa, L. E., Stiassny, M. I., Arroyave, J., Chang, J., Faircloth, B. C., MacGuigan, D. J., Harrington, R. C., Benine, R. C, Burns, M. D., Hoekzema, K, Sanches, N. C., Maldonado-Ocampo, J. A., Castro, R. M. C, Foresti, F., Alfaro, M. E., and C. Oliveira. (2021). Accelerated diversification explains the exceptional species richness of an ancient lineage of tropical freshwater fishes. Systematic Biology. DOI: 10.1093/sysbio/syab040
11. MacGuigan, D. J., Hoagstrom, C. W., Domisch, S., Hulsey, C. D., and T. J. Near. (2021). Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae). Zoologica Scripta. DOI: 10.1111/zsc.12504
10. Near, T. J, MacGuigan, D. J., Boring, E., Simmons, J. W., Albanese, B., Keck, B. P., Harrington, R. C., Dinkins, G. R. (2021). A new species of bridled darter endemic to the Etowah River System in Georgia (Percidae: Etheostomatinae: Percina). Bulletin of the Peabody Museum of Natural History. DOI: 10.374/014.062.0102
9. Daane, J. M., Dornburg, A., Smits, P., MacGuigan, D. J., Hawkins, M. B., Near, T. J., Detrich, H. W., and M. P. Harris. (2019). Historical contingency shapes adaptive radiation in Antarctic fishes. Nature Ecology and Evolution. DOI: 10.1038/s41559-019-0914-2
8. Bowman Jr, L. L., MacGuigan, D. J., Gorchels, M. E., Cahillane, M. M., and M. V. Moore. (2019). Revealing paraphyly and placement of extinct species within Epischura (Copepoda: Calanoida) using molecular data and quantitative morphometrics. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2019.106578
7. Ng, J., MacGuigan, D. J., Kelly, A. L., and R. E. Glor. (2019). Do male-male interactions drive changes in dewlap size? Anolis Newsletter VII. DOI: 10.7936/gjg3-h168
6. MacGuigan, D. J. and T. J. Near. (2018). Phylogenomic signatures of ancient introgression in a rogue lineage of darters (Percidae: Etheostomatinae). Systematic Biology. DOI: 10.1093/sysbio/syy074
5. Near, T. J., MacGuigan, D. J., Parker, E., Struthers, C. D., Jones, C. D., and A. Dornburg. (2018). Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiations. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2018.09.001
4. Schultheis, E. H. and D. J. MacGuigan. (2018). Competitive ability, not tolerance, may explain success of invasive species over native and noninvasive exotics. Biological Invasions. DOI: 10.1007/s10530-018-173-0
3. Kozal, L. C., Simmons, J. W., Mollish, J. M., MacGuigan, D. J., Benavides, E., Keck, B. C., and T. J. Near. (2017). Phylogenetic and morphological diversity of the Etheostoma zonistium species complex with the description of a new species endemic to the Cumberland Plateau of Alabama. Bulletin of the Peabody Museum of Natural History. DOI: 10.3374/014.058.0202
2. MacGuigan, D. J., A. J. Geneva, and R. E. Glor. (2017). A genomic assessment of species boundaries and hybridization in a group of highly polymorphic anoles (distichus species complex). Ecology and Evolution. DOI: 10.1002/ece3.2751
1. Ng, J., Kelly, A. L., MacGuigan, D. J., and R. E. Glor. (2013). The role of heritable and dietary factors in the sexual signal of a Hispaniolan Anolis lizard, Anolis distichus. Journal of Heredity. DOI: 10.1093/jhered/est060
19. Brownstein, C. D.*, MacGuigan, D. J.*, Kim, D., Orr, O., Yang, L., David, S. R., Kreiser, B., and T. J. Near. (2024). The genomic signatures of evolutionary stasis, Evolution. DOI: 10.1093/evolut/qpae028
18. MacGuigan, D. J., Krabbenhoft, T. J., Harrington, R. C., Wainwright, D. K., Backenstose, N. J. C., and T. J. Near. (2023). Lacustrine speciation associated with chromosomal inversion in a lineage of riverine fishes. Evolution. DOI: 10.1093/evolut/qpad067
17. MacGuigan, D. J., Porto-Hannes, I., Foote, B., Backenstose, N. J. C., Osborne, C., Louisor, K., Waterman, H., Chang, S. L., Cochran, J. L., and T. J. Krabbenhoft. (2023). Spotty distributions: Spotted Gar (Lepisosteus oculatus) and Spotted Sucker (Minytrema melanops) range expansion in eastern Lake Erie. Journal of Great Lakes Research. DOI: 10.1016/j.jglr.2023.05.009
16. Near, T. J., Simmons, J. W., Strange, R. M., Brandt, S. L. Thomas, M. R., Harrington, R. C., and D. J. MacGuigan. (2023). Systematics of the Stripetail Darter, Etheostoma kennicotti (Putman), and the Distinctiveness of the Upper Cumberland Endemic Etheostoma cumberlandicum Jordan and Swain. Ichthyology & Herpetology. DOI: 10.1643/i2021053
15. MacGuigan, D. J.*, Mount, G. G.*, Watkins-Colwell, G. J., Near, T. J., and M. R. Lambert. (2022). Genomic Data Clarify Aquarana Systematics and Reveal Isolation-by-Distance Dominates Phylogeography of the Wide-Ranging Frog Rana clamitans. Ichthyology & Herpetology. DOI: 10.1643/h2021129
14. MacGuigan, D. J., Orr, O., and T. J. Near. (2022). Phylogeography, population structure, hybridization, and species discovery in the Etheostoma nigrum species complex. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2022.107645
13. Krabbenhoft, T. J., MacGuigan, D. J., Backenstose, N. J. C., Waterman, H., Lan, T., Pelosi, J. A., Tan, M., and S. R. Sandve. (2021). Chromosome-Level Genome Assembly of the Chinese Sucker (Myxocyrpinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication. Genome Biology & Evolution. DOI: 10.1093/gbe/evab190
12. Melo, B. F., Sidlauskas, B., Near, T. J., Roxo, F. F., Ghezelayagh, A., Ochoa, L. E., Stiassny, M. I., Arroyave, J., Chang, J., Faircloth, B. C., MacGuigan, D. J., Harrington, R. C., Benine, R. C, Burns, M. D., Hoekzema, K, Sanches, N. C., Maldonado-Ocampo, J. A., Castro, R. M. C, Foresti, F., Alfaro, M. E., and C. Oliveira. (2021). Accelerated diversification explains the exceptional species richness of an ancient lineage of tropical freshwater fishes. Systematic Biology. DOI: 10.1093/sysbio/syab040
11. MacGuigan, D. J., Hoagstrom, C. W., Domisch, S., Hulsey, C. D., and T. J. Near. (2021). Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae). Zoologica Scripta. DOI: 10.1111/zsc.12504
10. Near, T. J, MacGuigan, D. J., Boring, E., Simmons, J. W., Albanese, B., Keck, B. P., Harrington, R. C., Dinkins, G. R. (2021). A new species of bridled darter endemic to the Etowah River System in Georgia (Percidae: Etheostomatinae: Percina). Bulletin of the Peabody Museum of Natural History. DOI: 10.374/014.062.0102
9. Daane, J. M., Dornburg, A., Smits, P., MacGuigan, D. J., Hawkins, M. B., Near, T. J., Detrich, H. W., and M. P. Harris. (2019). Historical contingency shapes adaptive radiation in Antarctic fishes. Nature Ecology and Evolution. DOI: 10.1038/s41559-019-0914-2
8. Bowman Jr, L. L., MacGuigan, D. J., Gorchels, M. E., Cahillane, M. M., and M. V. Moore. (2019). Revealing paraphyly and placement of extinct species within Epischura (Copepoda: Calanoida) using molecular data and quantitative morphometrics. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2019.106578
7. Ng, J., MacGuigan, D. J., Kelly, A. L., and R. E. Glor. (2019). Do male-male interactions drive changes in dewlap size? Anolis Newsletter VII. DOI: 10.7936/gjg3-h168
6. MacGuigan, D. J. and T. J. Near. (2018). Phylogenomic signatures of ancient introgression in a rogue lineage of darters (Percidae: Etheostomatinae). Systematic Biology. DOI: 10.1093/sysbio/syy074
5. Near, T. J., MacGuigan, D. J., Parker, E., Struthers, C. D., Jones, C. D., and A. Dornburg. (2018). Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiations. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2018.09.001
4. Schultheis, E. H. and D. J. MacGuigan. (2018). Competitive ability, not tolerance, may explain success of invasive species over native and noninvasive exotics. Biological Invasions. DOI: 10.1007/s10530-018-173-0
3. Kozal, L. C., Simmons, J. W., Mollish, J. M., MacGuigan, D. J., Benavides, E., Keck, B. C., and T. J. Near. (2017). Phylogenetic and morphological diversity of the Etheostoma zonistium species complex with the description of a new species endemic to the Cumberland Plateau of Alabama. Bulletin of the Peabody Museum of Natural History. DOI: 10.3374/014.058.0202
2. MacGuigan, D. J., A. J. Geneva, and R. E. Glor. (2017). A genomic assessment of species boundaries and hybridization in a group of highly polymorphic anoles (distichus species complex). Ecology and Evolution. DOI: 10.1002/ece3.2751
1. Ng, J., Kelly, A. L., MacGuigan, D. J., and R. E. Glor. (2013). The role of heritable and dietary factors in the sexual signal of a Hispaniolan Anolis lizard, Anolis distichus. Journal of Heredity. DOI: 10.1093/jhered/est060
Preprints
1. Backenstose, N., MacGuigan, D. J., Osborne, C., Bernal, M., Thomas, E., Normandeau, E., Yule, D., Stott, W., Ackiss, A., Albert, V. A. , Bernatchez, L., T. J. Krabbenhoft. (2023). Origin of the Laurentian Great Lakes fish fauna through upward adaptive radiation cascade prior to the Last Glacial Maximum. DOI:10.21203/rs.3.rs-2978383/v1
Doctoral Dissertation
D. J. MacGuigan. (2020). Speciation and Hybridization Across Multiple Temporal Scales in Darters (Teleostei: Percidae). Doctoral dissertation, Yale University. ProQuest Link
Committee: Thomas Near (Chair), Michael Donoghue, David Post, and Frank Burbrink
Committee: Thomas Near (Chair), Michael Donoghue, David Post, and Frank Burbrink
©2022 by Daniel J. MacGuigan, Ph.D.